py4vasp phonon band visualization
Hello,
I am plotting phonon bands of phthalocyanine (H20PBc) and am using py4vasp to pull the data from the vaspout.h5 file. I'm unfamiliar with Jupyter, so I initially used Spyder and a pandas database to plot the phonon bands. I then found I couldn't look at phonon modes of specific atoms, so I plotted the same data in Jupyter using the regular py4vasp commands (specifically, mycalc.phonon_band.to_plotly()). When selecting individual atoms, the bands in the plot turn from simple lines into wide, translucent bands. With the large number of bands, this makes the details in the plot difficult to discern. What is the significance of this visualization? I have attached images of the same data in Spyder, in Jupyter, and one more in Jupyter selecting a carbon atom.
-Michael