NEB irregular intermediate image spacing
Posted: Tue Jan 02, 2024 2:27 pm
Dear VASP Team & Community,
I conducted a NEB run involving 8 intermediate images to study the dissociation of a single H2 molecule on a pristine In2O3 (111) surface. The stability of both the initial and final positions was verified through phonon calculations. I initially preconverged with 5 irreducible k-points (from a regular mesh) and then run again with 10 (i.e. the previously determined optimized minimum-size mesh).Below is the input configuration used for the simulation:
ISTART = 1
ISPIN = 2
LREAL = Auto
ENCUT = 500
GGA = PS
PREC = A
IVDW = 12
LWAVE = F
LCHARG = F
LDIPOL = T
IDIPOL = 3
DIPOL = 0.5 0.5 0.5 #surface is at the center of the simulation cell with 7.5 Å vacuum above and 7.5 Å below
ISMEAR = 0
SIGMA = 0.01
NELM = 600
EDIFF = 1E-06
NSW = 350
IBRION = 3
POTIM = 0.01
ISIF = 2
EDIFFG = -0.05
SPRING = -5.0
IMAGES = 8
This was the converged result:
Image Coordinate Energy
0 0.000000 0.000000 -0.005403 0
1 0.575538 0.013775 0.000000 1
2 1.155446 0.037795 0.000000 2
3 1.752447 0.044760 0.000000 3
4 2.393366 0.053194 0.000000 4
5 3.026822 0.060578 0.000000 5
6 5.285085 -0.283756 0.000000 6
7 5.904995 -0.428009 0.000000 7
8 6.519384 -0.606187 0.000000 8
9 7.129280 -0.571166 -0.024608 9
The intermediate images were generated by a linear interpolation with minor tweaks to correct unphysical distances between the H atoms. The initial adsorption position was stable and obtained by a Monte Carlo thermal annealing run.
I subsequently performed a dimer calculation using VTST script that interpolated between images 5 and 6 but it converged in a single step with no significative change.
I would greatly appreciate your assistance with the following concerns:
How confident can I be that there is no transition state of higher energy between images 5 and 6, given the substantial distance spanning them? This occurrence is the first of its kind for me, as my previous Nudged Elastic Band (NEB) runs consistently yielded somewhat regularly spaced images. Could I performed a "sub"-NEB with images 5 and 6 as initial and final positions, even though they are not minima ?
Another issue is that image 8 exhibits lower energy than image 9. However, I came across information in DOI:10.1063/1.3684549 suggesting that regular NEB calculations can lead to such behavior, in contrast to single-surface NEB (ssNEB). Considering the relatively low energy difference, I initially disregarded it. Should I reconsider? If necessary, I can provide a compressed file (.rar) containing the calculation data.
Appreciate your attention and eventual counsel,
Sincerely,
I conducted a NEB run involving 8 intermediate images to study the dissociation of a single H2 molecule on a pristine In2O3 (111) surface. The stability of both the initial and final positions was verified through phonon calculations. I initially preconverged with 5 irreducible k-points (from a regular mesh) and then run again with 10 (i.e. the previously determined optimized minimum-size mesh).Below is the input configuration used for the simulation:
ISTART = 1
ISPIN = 2
LREAL = Auto
ENCUT = 500
GGA = PS
PREC = A
IVDW = 12
LWAVE = F
LCHARG = F
LDIPOL = T
IDIPOL = 3
DIPOL = 0.5 0.5 0.5 #surface is at the center of the simulation cell with 7.5 Å vacuum above and 7.5 Å below
ISMEAR = 0
SIGMA = 0.01
NELM = 600
EDIFF = 1E-06
NSW = 350
IBRION = 3
POTIM = 0.01
ISIF = 2
EDIFFG = -0.05
SPRING = -5.0
IMAGES = 8
This was the converged result:
Image Coordinate Energy
0 0.000000 0.000000 -0.005403 0
1 0.575538 0.013775 0.000000 1
2 1.155446 0.037795 0.000000 2
3 1.752447 0.044760 0.000000 3
4 2.393366 0.053194 0.000000 4
5 3.026822 0.060578 0.000000 5
6 5.285085 -0.283756 0.000000 6
7 5.904995 -0.428009 0.000000 7
8 6.519384 -0.606187 0.000000 8
9 7.129280 -0.571166 -0.024608 9
The intermediate images were generated by a linear interpolation with minor tweaks to correct unphysical distances between the H atoms. The initial adsorption position was stable and obtained by a Monte Carlo thermal annealing run.
I subsequently performed a dimer calculation using VTST script that interpolated between images 5 and 6 but it converged in a single step with no significative change.
I would greatly appreciate your assistance with the following concerns:
How confident can I be that there is no transition state of higher energy between images 5 and 6, given the substantial distance spanning them? This occurrence is the first of its kind for me, as my previous Nudged Elastic Band (NEB) runs consistently yielded somewhat regularly spaced images. Could I performed a "sub"-NEB with images 5 and 6 as initial and final positions, even though they are not minima ?
Another issue is that image 8 exhibits lower energy than image 9. However, I came across information in DOI:10.1063/1.3684549 suggesting that regular NEB calculations can lead to such behavior, in contrast to single-surface NEB (ssNEB). Considering the relatively low energy difference, I initially disregarded it. Should I reconsider? If necessary, I can provide a compressed file (.rar) containing the calculation data.
Appreciate your attention and eventual counsel,
Sincerely,